For what it's worth, I hear/feel the same thing. Doing quick A/B comparisons on identical presets, with sync'd firmware versions. It's different from Amp model to Amp model IMHO. Some are virtually indistinguishable, some are not? It's subtle, but it is there.
I end up adding some 'High Treble' or 'Presence' in the Amp block, and/or bumping up the 'High-Cut' in the Cab block on the FM9 and FM3 versions to compensate a bit.
I end up adding some 'High Treble' or 'Presence' in the Amp block, and/or bumping up the 'High-Cut' in the Cab block on the FM9 and FM3 versions to compensate a bit.