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Working with external controllers can be quite complicated...
When you attach an external controller to the Bypass parameter in the Amp blocks, you're in fact transferring responsibility for setting the engaged/bypass state of those blocks from the Axe-Fx to the MFC. In other words: the saved state of the preset does not longer dictate the initial state of those blocks. Instead, an IA switch (set to the CC of the attached external controller) is in charge.
When using the MFC, such an IA switch is called a'"general use" switch. Meaning that it's not directly controlling Axe-Fx functionality, but it's configured using general MIDI .
A general use switch can be set to "global, or not" and "send w/preset, or not". Defaults: global and send w/preset.
This means that the current state of the IA switch on the MFC always determines which amp block becomes active when switching presets.
When switching to a preset, you may want a specific Amp block to be engaged or bypassed, regardless of the current state of the IA switch. This is possible. For this you need to enter the Preset menu on the MFC. Scroll to the IA switch commands, and set the IA switch which controls the external controller to On or Off. That's it.
Note that using external controllers to switch between blocks can introduce delays / audible switching when switching presets. The Scenes functionality, due to appear in upcoming firmware, may present a better way to quickly switch between Amp blocks.
When you attach an external controller to the Bypass parameter in the Amp blocks, you're in fact transferring responsibility for setting the engaged/bypass state of those blocks from the Axe-Fx to the MFC. In other words: the saved state of the preset does not longer dictate the initial state of those blocks. Instead, an IA switch (set to the CC of the attached external controller) is in charge.
When using the MFC, such an IA switch is called a'"general use" switch. Meaning that it's not directly controlling Axe-Fx functionality, but it's configured using general MIDI .
A general use switch can be set to "global, or not" and "send w/preset, or not". Defaults: global and send w/preset.
This means that the current state of the IA switch on the MFC always determines which amp block becomes active when switching presets.
When switching to a preset, you may want a specific Amp block to be engaged or bypassed, regardless of the current state of the IA switch. This is possible. For this you need to enter the Preset menu on the MFC. Scroll to the IA switch commands, and set the IA switch which controls the external controller to On or Off. That's it.
Note that using external controllers to switch between blocks can introduce delays / audible switching when switching presets. The Scenes functionality, due to appear in upcoming firmware, may present a better way to quickly switch between Amp blocks.