If you are adventurous, you can try experimenting with placing resistors in series with the LEDs to reduce brightness. You might start with a variable resistor (potentiometer) and measure the DC resistance of the pot when the desired brightness is achieved, then replace the pot with a fixed resistor of the same value. This method will, alas, give varying results even when the resistance has the same value. This is because the amount of forward current required for to produce light varies even among LEDs in the same manufacturing lot. In practice, different LEDs may be dimmed by different amounts, even if the resistor value is the same.
Another approach might be to use optical filtering. You can purchase sheets of neutral grey gel filter inexpensively. Find a filter density that suits you (transmission=75%, or 50%, or other value to taste) and affix small squares of gel over the LEDs. Hokey? You bet. But it may be the least expensive way to achieve your goal.
Yet another approach might be to ask Fractal Audio if the current supply to the LEDs might be under software control. If so, perhaps they might expose that value as a user-controllable parameter in a future release of MFC-101 software.
Finally, it could just be that your future's so bright, you gotta wear shades.