A few firmwares ago, the gain on many of the Fender cleans went up & I had to back down the gain and input trim to have an always clean Twin patch. After installing 11.01 (from 10.11) & reinitializing the amp block, my Twin patch was clipping on the output with a hot humbucker guitar. It wasn't pushing the amp into overdrive sounds, but the clipping light was coming on. I even recreated the patch, but still had the output clipping. If I lowered the Level setting enough to get rid of the clipping, the patch was noticeably lower in volume than my other patches.
Because of the previous firmwares, I was lowering the Gain to 1.50 and raising the Level to 0.00dB (and lowering the Input Trim down a bit, too, IIRC), so I raised the Gain up to 3.00 and lowered the Level to -6.00dB. Input Trim was reset to 1.00 by the reinitialize. The patch now stays clean with my hottest humbucker without clipping. The only tweaking I had to do was with BMTP and I added a touch of EQ at 250Hz & 500Hz to fatten it up a bit.
In the past, I've added Dynamics & Dynamic Presence & lowered Transformer Match, etc. with most of my clean patches. Now, I just reinitialize the amps and adjust BMTP & maybe EQ. I'm finding 11.01 to be much easier & faster to dial up great sounding patches without a lot of fiddling other than basic amp settings.