What I am hearing is that our guitars sound just a bit different. Mind sounds a bit thinner and yours is fatter. It pretty bass heavy and has big low-mids, while mine has less (and therefore a tighter) bass and a little dip in the low-mids.
Your sound reminds me very much of my Charvel 750 XL. On the analyzer, our tracks do not differ very much and look quite similar. So I just hear two different guitars, everything else is just fine.
You can adjust the patch to match your guitar by taming the bass and maybe the low-mids with the EQs. Thanks to Cliff, the Axe-Fx reacts to different guitars very well... as we can see here.