It looks like the Axe now stores preset-specific values for modifier-associated parameters. I haven't been checking each firmware to know when this changed, but you can see the value and change it w/ the wheel (the on-screen knob and true current value/sound will still reflect the modifier), save the preset and see the new saved value when you return. If you disable the modifier that value is used. It's not the pedal/cc ignore option itself though... still hopeful that can be added.