It might just be the cables aren’t suitable for data comms. Could be they work fine for audio though.UPDATE: Booted up the AxeFX3 this morning with fresh XLR cables and the unit + FC-6 is working flawlessly as intended. Looks like I managed to grab 2 bad cables from my stockpile yesterday. I'll update again if the problem resurfaces.
Happy to hear it was just the cables though!