I know this has been discussed before. With the Axe FX II, apparently it was fixed in a firmware update. But it's happening again with Axe II v16.05. It's especially noticeable if the two presets use different amps. The thump is serious enough to cause issues at performance levels.
My output levels are the same. I try to keep the master volume level the same. If the MV level is drastically different, even with the same amp, you'll get a thump. If the two amps are different, no amount of adjustment of the MV will eliminate the thump.
Suggestions?
When you switch songs, what scene are you on in Song A?
The AMP block output on Song A Scene 1 is in a reasonable range, the rest are extremely low. The AMP block output on Song B Scene 1 is extremely hot with a very reduced input trim, a lot higher than anything I've needed to use. Resetting the output and the trim to their defaults got rid of the problem to where it was barely audible.
Following that, on the authentic tab for Song A's amp, I reset the tone controls, and when I reset the Bass control by double-clicking it, I recreated the thump.
Doing a
hard reset on both amps back to their defaults got rid of the problem entirely, and all that's left seems to be a quick drop and ramp up in volume because of the different amp types causing the CPU to let the models settle. It's expected.
I'd recommend doing the hard reset on the channels, then carefully adjusting them back to the desired sound, using the Snapshot tool each time you tweak a preset, so you can roll backwards and forwards and switch presets, looking to see if the thump is reintroduced. If it comes back, you can revert to the previous snapshot, and, at that point see if is reintroduced by rolling forward one step. If so, dig into that particular adjustment to figure out what is causing the problem.
Are you letting the guitar ring as you switch presets? That would make the preset change more obvious because of the volume drop and rise. If so, I'd try to find a moment of silence when I could change.
https://wiki.fractalaudio.com/wiki/index.php?title=Presets#Preset_levels and its following section might help.